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Evidence · Preprints · continued

How this community labels and discusses unrefereed work posts 31–60

This is a continuation of a long topic, addressed by post number rather than by page. Start at post 1.

CI
citation_indexTL2Member21 Jun 2024#31

Post #27 put the caveat in the right place and I want to underline it.

Reading a preprint properly means doing some of the reviewer's job: methods first, then whether the analysis matches the plan, then the conclusion.

That is the practical version. The rigorous version is longer and says the same thing.

9 likes 2.1y
AK
a.kravchenkoTL221 Jun 2024#32

Building on post #31 rather than restating it.

The honest position on most preprints in this field is that they are interesting and provisional, and that saying both is not fence-sitting.

2 likes 2.1y
SG
s.grahameTL2Member22 Jun 2024#33

On community labels, the part that usually goes wrong is that the question is asked as though it has one answer. It has a range, and the width of the range is the interesting bit.

If you can post the two or three numbers you are working from, several people here will check the arithmetic rather than argue about the conclusion.

0 likes 2.1y
ER
e.roosTL222 Jun 2024#34
titration_diary, post #18: How to cite a preprint: author last name, first initial, et al. Title. Server name [preprint]. Posted date. Doi. Include the server name and note that it is a preprint. The disagreement above is smaller than it looks once the terms are fixed. Go to post

Unrefereed work is not worthless and a great deal of it survives review substantially unchanged. That is the accurate framing and it is not a licence to treat it as final.

I would hold that lightly until someone with a larger sample weighs in.

21 likes in reply to #18 2.1y
BJ
b.jankowiakTL3Regular23 Jun 2024#35

A preprint that has been up for two years without appearing in a journal is telling you something, and it is not necessarily that the work is bad.

Adding it in case it saves somebody the afternoon it cost me.

5 likes 2.1y
RM
r.mensahTL223 Jun 2024#36

Taking post #35 at face value and following it one step further.

Community labels has been discussed here with more heat than it deserves, mostly because two definitions have been in play the whole time.

1 like 2.1y
B
BirkelandTL3Regular24 Jun 2024#37
b.okonkwo, post #24: Adding a reference point for community labels. Mine is a single case, collected without controls, and I am posting the method alongside it so it can be discounted appropriately. Go to post

I read post #35 twice before replying, because I had assumed the opposite.

A note on scope: what I am saying about community labels applies to the case in the first post and I would not extend it further without checking.

30 likes in reply to #24 2.1y
VR
v.rautioTL224 Jun 2024#38
g.tanaka, post #16: Answering the community labels question as asked, then the question I think is meant. As asked: yes, with the qualification below. As meant: it depends on how the first measurement was taken. Go to post

Seconded. It reads as careful rather than confident, which is the right register.

15 likes in reply to #16 2.1y
M
MJayawardenaTL3Regular25 Jun 2024#39

Author track record is a weak signal and it is a signal. A group that has published carefully for years is a different prior from an unknown one.

If the premise is wrong, everything after it is decoration.

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NZ
n.zielinskiTL225 Jun 2024#40
VN
v.nascimentoTL226 Jun 2024#41
m.mwangi, post #15: Discussing preprints in this community: bring them in for early discussion, label them clearly as preprints, invite peer critique, and be prepared for the discussion to differ if the paper is later published differently. I am confident about the direction and much less about the magnitude. Go to post

Where a preprint contradicts a published trial, the prior should favour the trial. Where it extends one, the preprint can be genuinely useful.

21 likes in reply to #15 2.1y
LW
l.wikstromTL226 Jun 2024#42
h.iyer, post #25: Picking up post #22: that is the part I would want checked first. Author track record is a weak signal and it is a signal. A group that has published carefully for years is a different prior from an unknown one. I am not the right person to answer the follow-up to this. Go to post

Quietly grateful for the plain phrasing. Not every thread gets that.

0 likes in reply to #25 2.1y
FK
f.kimaniTL226 Jun 2024#43

Practical answer on community labels, since the theoretical one is upthread: do the simplest check first, write down the result, and only then decide whether the complicated explanation is needed. It usually is not.

1 like 2.1y
K
KLindqvistTL4 Moderator27 Jun 2024#44

The failure mode on community labels is boring rather than dramatic. It is almost always the step everyone assumes was done correctly because it is too simple to get wrong.

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JP
j.petrovTL227 Jun 2024#45

Discussing preprints in this community: bring them in for early discussion, label them clearly as preprints, invite peer critique, and be prepared for the discussion to differ if the paper is later published differently.

15 likes 2.1y
DO
d.oyelaranTL3Pharmacist28 Jun 2024#46
hana.sato, post #22: Worth separating two things that post #20 runs together. Where a preprint contradicts a published trial, the prior should favour the trial. Where it extends one, the preprint can be genuinely useful. I would be interested in a counterexample if anyone has one. Go to post

Sample size and pre-registration are checkable in a preprint exactly as in a paper, and they carry the same weight.

30 likes in reply to #22 2.1y
NK
n.krastevTL228 Jun 2024#47

Post #44 is right about the mechanism and I think understates the practical bit.

If someone has run community labels properly I would rather read that than my own reconstruction of it. Posting mine only because the thread has gone quiet.

0 likes 2.1y
BD
baseline_driftTL2Analytical chemist29 Jun 2024 · edited#48

Agreed on community labels, with one qualification that I think matters. The reasoning holds for the case as described. Change the starting assumption and it does not, and the starting assumption is the part nobody states.

3 likes 2.1y
IA
id.almeidaTL229 Jun 2024#49

How to cite a preprint: author last name, first initial, et al. Title. Server name [preprint]. Posted date. Doi. Include the server name and note that it is a preprint.

The confident version of this sentence would be wrong, so here is the hedged one.

0 likes 2.1y
BV
bias_varianceTL430 Jun 2024#50
EM
e.mbekiTL230 Jun 2024#51

What would change my mind on community labels is a second dataset collected by someone with no stake in the first. Until then I hold it loosely and I would rather say so than pretend to more.

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GT
g.tanakaTL3Regular1 Jul 2024#52

A preprint with the data and code attached is frequently more checkable than a published paper without them. Reviewed and reproducible are different properties.

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MK
m.kjaerTL21 Jul 2024#53

Post #49 describes the usual case. This is about the unusual one.

Speaking only to community labels as I have actually seen it, rather than as it is usually described: the effect is real, it is smaller than the thread suggests, and the variance between people is larger than the effect.

0 likes 2.1y
PN
priorauth_notesTL2Regular2 Jul 2024#54
q.zhao_qa, post #30: Marking my uncertainty on community labels explicitly. I am confident about the direction, much less confident about the size, and not confident at all that it generalises past the case in the first post. Go to post

The useful distinction on community labels is between what was measured and what was inferred from it. Both end up in the same sentence and only one of them has error bars.

0 likes in reply to #30 2.1y
MR
m.ramosTL22 Jul 2024#55
g.tamm, post #7: Useful. I had the fact and not the reason, which turns out to be the important half. Go to post

Building anything durable on a preprint means committing to rebuild it. That is a reasonable trade for a fast-moving question and it should be an explicit one.

Adding the caveat now so it does not have to be extracted later.

9 likes in reply to #7 2.1y
CB
careful_beginnerTL1Member2 Jul 2024 · edited#56

Acknowledging rather than arguing. The reasoning holds as far as I can follow it.

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MI
m.ilungaTL23 Jul 2024#57

On post #53 — agreed on the reasoning, with one qualification.

Practical note on community labels: write down what you expect before you look. The number of times I have found what I went looking for is higher than chance would allow.

0 likes 2.1y
RH
revision_historyTL3Wiki editor3 Jul 2024#58
n.okwuosa, post #27: Unrefereed work is not worthless. A great deal of it survives review substantially unchanged. It is also the case that the version appearing in a journal frequently has different numbers, and the changes are not random — they tend to be in the direction of a smaller effect and a more careful claim. Go to post

Picking up post #57: that is the part I would want checked first.

I disagree with the framing of community labels above, and I think it is a substantive disagreement rather than a terminological one. Setting out why, so it can be checked.

The reasoning depends on an assumption that is doing a lot of work and is never stated. If the assumption holds, the conclusion follows. I do not think it holds generally.

28 likes in reply to #27 2.1y
AL
a.lindqvistTL24 Jul 2024#59

Post #57 and I disagree about the size of the effect, not about the direction.

Where a preprint contradicts a published trial, the prior should favour the trial. Where it extends one, the preprint can be genuinely useful.

I am aware this is the third time this month I have made this point.

27 likes 2.1y
GV
g.valckenaereTL3Regular4 Jul 2024#60

Taking post #57 at face value and following it one step further.

I think the community labels question is answerable and has not been answered, which is a more optimistic position than most of this thread.

13 likes 2.1y