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Analytics · Mass spectrometry · continued

What a 2 ppm match establishes, and what it does not posts 31–60

This is a continuation of a long topic, addressed by post number rather than by page. Start at post 1.

RH
revision_historyTL3Wiki editor6 Jul 2025#31

Everything in post #28 holds. The case it does not cover is the one I have.

Quantitation by MS: most quantitation is done by LC-UV detection at 214 nm, not by MS, because extinction coefficients are better known. MS can quantify if an internal standard is used but that requires preparation.

Not the answer, but possibly the question that gets there.

1 like 13mo
AA
a.adeyemiTL210 Jul 2025#32

The most useful thing anyone has posted about 2 ppm match in this category was a table of what had been measured and by whom. That is what I would want again.

0 likes 13mo
WT
week_threeTL1Member14 Jul 2025#33
s.vogel, post #7: Adding the measurement that post #4 says would settle it. A mass match establishes that the measured mass is consistent with the proposed composition. It does not establish purity, sequence order, or the absence of an isomer, and all three are frequently claimed from it. Go to post

I would rather this thread reach "we do not know" about 2 ppm match than reach a confident answer that nobody can support when asked.

17 likes in reply to #7 12mo
JI
j.ivaturiTL217 Jul 2025 · edited#34

Resolution and mass accuracy are different specifications. An instrument can resolve two species and still assign their masses imprecisely, and the reverse is also possible.

I have kept the units in throughout, for the obvious reason.

7 likes 12mo
HO
h.oyelowoTL2Regular21 Jul 2025#35

I read post #31 twice before replying, because I had assumed the opposite.

Adding a null result on 2 ppm match. I looked, carefully, and found nothing, and null results deserve posting precisely because they never are.

0 likes 12mo
RZ
ro.zielinskiTL225 Jul 2025#36
BDraganov, post #16: Post #13 is right about the mechanism and I think understates the practical bit. Positional isomers and epimers are mass-identical. Any argument that a mass result rules them out is wrong, and it is the commonest overclaim in this subcategory. I would put this at better than even and not much better. Go to post

Post #35 answers the question as asked. The question underneath it is different.

The honest summary of what a mass result buys you: it narrows the field of what the material could be, considerably. It never closes it, and no certificate should be read as though it had.

It is a small point and it changes the answer, which is an awkward combination.

0 likes in reply to #16 12mo
M
microgramsTL228 Jul 2025#37
MR
m.radichTL21 Aug 2025#38

Adding a note of thanks rather than an opinion. I did not know most of that.

4 likes 12mo
DV
dr.villanuevaTL3Physician5 Aug 2025#39

This is the answer, and the reason it is the answer is the more useful part.

6 likes 12mo
EI
e.iyerTL28 Aug 2025#40

Adding the measurement that post #36 says would settle it.

The useful distinction on 2 ppm match is between what was measured and what was inferred from it. Both end up in the same sentence and only one of them has error bars.

1 like 12mo
FF
f.fenwickTL3Regular12 Aug 2025#41

A request rather than an answer: could whoever has the primary source for 2 ppm match post it? I have seen the claim three times this month and each version had lost a qualifier.

2 likes 12mo
LA
l.aguirreTL215 Aug 2025#42
micrograms, post #37: Calibration matters: a high-resolution instrument out of calibration can report mass with ppm error large enough to be uninformative. Check when the instrument was last calibrated before trusting the reported accuracy. Go to post

Resolution: "high resolution" commonly means <5 ppm across the mass range. Unit-resolution instruments achieve ±1 Da at best and cannot distinguish two species differing by less than 1 Da in total mass.

Someone should write this up properly, and it should probably not be me.

9 likes in reply to #37 11mo
RF
r.friskTL219 Aug 2025#43
HF
h.ferrariTL222 Aug 2025#44

Calibration state at the time of the run determines whether the ppm figure means anything. A report that states when the instrument was last calibrated is unusual and is worth more than one that does not.

0 likes 11mo
EL
e.lehtinenTL226 Aug 2025 · edited#45

I changed my mind about 2 ppm match after someone here asked me for the source and I could not produce one. That is worth saying out loud because it is the ordinary way it happens.

1 like 11mo
BA
b.aaltoTL229 Aug 2025#46

What would change my mind on 2 ppm match is a second dataset collected by someone with no stake in the first. Until then I hold it loosely and I would rather say so than pretend to more.

5 likes 11mo
KF
k.fonsecaTL22 Sep 2025#47
j.vandermolen, post #1: What a 2 ppm match establishes, and what it does not — that is the question, and I have not found it answered plainly anywhere I have looked. Working through the identity arithmetic and I would like it checked. semaglutide has a monoisotopic mass close to 4113.6 Da. On an electrospray instrument I would expect to see the multiply… Go to post

That is a cleaner way of putting what I was circling around.

15 likes in reply to #1 11mo
KV
k.vanheckeTL25 Sep 2025#48

Answering the question post #46 raises rather than the one it answers.

Positional isomers and epimers are mass-identical. Any argument that a mass result rules them out is wrong, and it is the commonest overclaim in this subcategory.

Written in the hope of being told what I have missed.

30 likes 11mo
W
WoodhouseTL2Member9 Sep 2025#49

Building on post #48 rather than restating it.

On 2 ppm match, the part that usually goes wrong is that the question is asked as though it has one answer. It has a range, and the width of the range is the interesting bit.

If you can post the two or three numbers you are working from, several people here will check the arithmetic rather than argue about the conclusion.

0 likes 11mo
SR
s.radichTL212 Sep 2025#50
ar.kravchenko, post #5: Agreed on 2 ppm match, with one qualification that I think matters. The reasoning holds for the case as described. Change the starting assumption and it does not, and the starting assumption is the part nobody states. Go to post

Post #46 put the caveat in the right place and I want to underline it.

Purity and identity are different questions: LC-MS establishes that the species at a retention time has the expected mass. It does not establish how much of the sample is that species (that is what LC-UV purity answers).

The right answer here may simply be that it has not been measured.

3 likes in reply to #5 10mo
RP
r.petrovTL216 Sep 2025#51

Reframing 2 ppm match slightly, because I think the disagreement is about the question rather than the answer. If the question is "does it happen", yes. If it is "how often", nobody here knows.

8 likes 10mo
PE
ppm_errorTL3Analytical chemist19 Sep 2025#52

Fair, and the limits you put on it are the part I will remember.

2 likes 10mo
BV
b.vanheckeTL222 Sep 2025#53
ar.kravchenko, post #5: Agreed on 2 ppm match, with one qualification that I think matters. The reasoning holds for the case as described. Change the starting assumption and it does not, and the starting assumption is the part nobody states. Go to post

I had written a reply contradicting post #49 and deleted it. Here is what survived.

A mass match establishes that the measured mass is consistent with the proposed composition. It does not establish purity, sequence order, or the absence of an isomer, and all three are frequently claimed from it.

Worth reading the earlier posts in this thread before acting on mine.

0 likes in reply to #5 10mo
C
chromatogramTL4Analytical chemist26 Sep 2025#54

The honest summary of what a mass result buys you: it narrows the field of what the material could be, considerably. It never closes it, and no certificate should be read as though it had.

That is one dataset and I would not build a rule on it.

26 likes 10mo
NV
n.vukovicTL229 Sep 2025#55

The claim about 2 ppm match upthread is stronger than its source supports. I have read the source. The source says "associated with" and the post says "causes".

5 likes 10mo
AD
appeals_deskTL3Regular2 Oct 2025#56

Quantitation by MS: most quantitation is done by LC-UV detection at 214 nm, not by MS, because extinction coefficients are better known. MS can quantify if an internal standard is used but that requires preparation.

The mechanism is plausible, which is not the same as established.

0 likes 10mo
YR
y.rahimiTL26 Oct 2025#57
appeals_desk, post #56: Quantitation by MS: most quantitation is done by LC-UV detection at 214 nm, not by MS, because extinction coefficients are better known. MS can quantify if an internal standard is used but that requires preparation. The mechanism is plausible, which is not the same as established. Go to post

Coming back to post #53, because the follow-up matters more than the original answer.

An observation about 2 ppm match that I cannot explain and am posting anyway, on the principle that unexplained observations are more useful public than private.

0 likes in reply to #56 10mo
P
preregisteredTL3Research methods9 Oct 2025#58

Post #57 is right about the mechanism and I think understates the practical bit.

My understanding of 2 ppm match is a few years old and may have been superseded. If it has been, I would genuinely like to know rather than keep repeating it.

19 likes 10mo
NS
n.stanescuTL212 Oct 2025#59

This is the first time the answer has come with its own limits attached. Appreciated.

2 likes 10mo
LC
lu.cabreraTL216 Oct 2025#60

Resolution: "high resolution" commonly means <5 ppm across the mass range. Unit-resolution instruments achieve ±1 Da at best and cannot distinguish two species differing by less than 1 Da in total mass.

I checked the source rather than the summary, and they differ.

0 likes 9mo